dding updates to gnommo

claude.sh

@@ -1,4 +1,5 @@
 #!/bin/bash
 
-claude --resume b0382a18-067d-4420-9c67-9c19b5034453
+claude --resume df8f915f-0f99-4e0f-b345-3562a49fcb06
+
 

gnommo/cli.py

@@ -1992,7 +1992,6 @@ def cmd_stitch(
         # Create/update narration_combined entry
         existing_videos["narration_combined"] = {
             "source_file": "narration_combined.mov",
-            "output_file": "narration_combined.mov",
             "cutout": cutout,
             "always_visible": True,
             "volume": 1.0,
@@ -3038,6 +3037,7 @@ _RSYNC_EXCLUDES = [
     "media/videos/intermediate/**",
     "media/narration/processed/",
     "media/narration/processed/**",
+    "media/videos/narration_combined.mov",
     # Chunk scratch directories
     "**/chunks/",
     "**/chunks/**",

gnommo/parser.py

@@ -720,3 +720,106 @@ def resolve_video_file(
 
     # Direct video file reference
     return ref_path, None
+
+
+def resolve_missing_videos(
+    missing_ids: list[str],
+    project_path: Path,
+    config: Optional[ProjectConfig] = None,
+) -> dict[str, VideoSource]:
+    """
+    For video IDs not found in the project's videos.json, look them up in
+    shared_assets/videos.json. When a match is found the entry is written back
+    into the project's videos.json with ``is_shared: true`` so subsequent runs
+    find it without another lookup.
+
+    Returns a dict of newly resolved VideoSource objects (only the ones found).
+    Silently ignores IDs that aren't in the shared library either.
+    """
+    if not missing_ids:
+        return {}
+
+    # Locate shared_assets
+    shared_dir: Optional[Path] = None
+    if (project_path / "shared_assets").exists():
+        shared_dir = project_path / "shared_assets"
+    elif (project_path.parent / "shared_assets").exists():
+        shared_dir = project_path.parent / "shared_assets"
+
+    if shared_dir is None:
+        return {}
+
+    shared_videos_path = shared_dir / "videos.json"
+    if not shared_videos_path.exists():
+        return {}
+
+    try:
+        shared_data = _read_json(shared_videos_path)
+    except (json.JSONDecodeError, OSError):
+        return {}
+
+    found = {vid_id for vid_id in missing_ids if vid_id in shared_data}
+    if not found:
+        return {}
+
+    # Load the project's videos.json so we can append to it
+    if config and config.videos_path:
+        local_videos_path = project_path / config.videos_path
+    else:
+        local_videos_path = project_path / "videos.json"
+
+    try:
+        local_data = _read_json(local_videos_path) if local_videos_path.exists() else {}
+    except (json.JSONDecodeError, OSError):
+        local_data = {}
+
+    resolved: dict[str, VideoSource] = {}
+    for video_id in sorted(found):
+        entry = dict(shared_data[video_id])
+        entry["is_shared"] = True
+
+        # Persist into the project's videos.json
+        local_data[video_id] = entry
+        print(f"  → Copied shared video '{video_id}' into videos.json (is_shared=true)")
+
+        # Build the in-memory VideoSource
+        attribution = None
+        if "attribution" in entry:
+            attr = entry["attribution"]
+            attribution = Attribution(
+                source=attr.get("source", "unknown"),
+                creator=attr.get("creator", "Unknown"),
+                url=attr.get("url"),
+            )
+
+        raw_duration = entry.get("duration")
+        raw_has_audio = entry.get("has_audio")
+        resolved[video_id] = VideoSource(
+            source_file=entry["source_file"],
+            filter=entry.get("filter", []),
+            output_file=entry.get("output_file"),
+            take=entry.get("take"),
+            skip=float(entry.get("skip", 0.0)),
+            zoom=float(entry.get("zoom", 1.0)),
+            cutout=entry.get("cutout"),
+            always_visible=bool(entry.get("always_visible", False)),
+            is_shared=True,
+            pause_narration=float(entry.get("pause_narration", 0)),
+            attribution=attribution,
+            use_audio_channels=entry.get("use_audio_channels", "both"),
+            defer_loudnorm=bool(entry.get("defer_loudnorm", False)),
+            volume=float(entry.get("volume", 1.0)),
+            layer=entry.get("layer", "above"),
+            duration=float(raw_duration) if raw_duration is not None else None,
+            has_audio=bool(raw_has_audio) if raw_has_audio is not None else None,
+            end_on=entry.get("end_on"),
+        )
+
+    try:
+        with open(local_videos_path, "w", encoding="utf-8") as fh:
+            json.dump(local_data, fh, indent=4)
+            fh.write("\n")
+    except OSError as e:
+        print(f"  Warning: could not update videos.json: {e}")
+
+    return resolved

gnommo/transformer.py

@@ -1,6 +1,5 @@
 """Transform stage: resolve timings and build render plan."""
 
-import difflib
 import re
 import string
 from dataclasses import dataclass
@@ -23,7 +22,7 @@ from .models import (
     VideoEvent,
     VideoSource,
 )
-from .parser import get_video_duration
+from .parser import get_video_duration, resolve_missing_videos
 from .transcriber import TranscribedWord
 
 # Audio trigger offset: play sound this many seconds before the marker
@@ -178,104 +177,182 @@ def _strip_unknown_markers(
     return re.sub(r"\[([^\]]+)\]", "", text)
 
 
-def _build_sequence_alignment(
+def _extract_marker_contexts(
     manuscript_text: str,
-    transcription: list[TranscribedWord],
     slides: dict = None,
     videos: dict = None,
     audio: dict = None,
-) -> tuple[list[str], list[tuple[str, int]], dict[int, int]]:
+) -> list[tuple[str, str, bool]]:
     """
-    Build a global word-level alignment between manuscript and transcription.
+    Extract known markers and the text immediately following them from manuscript.
 
-    Strips markers from the manuscript to produce a plain word sequence, then
+    Unknown markers are filtered out and stripped from following text.
-    uses difflib.SequenceMatcher to align it against the transcript word list.
+    Note: [cite:...] markers are already stripped at parse time.
-    Ad-libbed words in the transcript appear as insertions and don't break the
-    alignment of surrounding manuscript text.
 
-    Returns:
+    Returns list of (marker_id, following_text, is_borrowed) tuples for known markers only.
-        ms_words:         normalized manuscript word list (markers stripped)
-        marker_positions: list of (marker_id, word_idx) in manuscript order,
-                          where word_idx is the index of the first following word
-        alignment:        dict mapping manuscript_word_idx → transcript_word_idx
     """
     slides = slides or {}
     videos = videos or {}
     audio = audio or {}
 
     parts = re.split(r"\[([^\]]+)\]", manuscript_text)
-    ms_words: list[str] = []
-    marker_positions: list[tuple[str, int]] = []
 
-    for i, part in enumerate(parts):
+    raw_contexts = []
-        if i % 2 == 0:
+    for i in range(1, len(parts), 2):
-            text = _strip_unknown_markers(part, slides, videos, audio)
+        marker_id = parts[i]
-            for w in text.split():
+
-                norm = _normalize_token(w)
+        if not _is_known_marker(marker_id, slides, videos, audio):
-                if norm:
+            continue
-                    ms_words.append(norm)
+
+        text_pieces = []
+        j = i + 1
+        while j < len(parts):
+            chunk = parts[j].strip()
+            if chunk:
+                text_pieces.append(chunk)
+            j += 1
+            if j >= len(parts):
+                break
+            if _is_known_marker(parts[j], slides, videos, audio):
+                break
+            j += 1
+
+        following_text = " ".join(text_pieces)
+        following_text = " ".join(following_text.split())
+        following_text = _strip_unknown_markers(following_text, slides, videos, audio)
+        following_text = " ".join(following_text.split())
+        raw_contexts.append((marker_id, following_text))
+
+    contexts = []
+    for i, (marker_id, following_text) in enumerate(raw_contexts):
+        if following_text:
+            words = following_text.split()[:10]
+            contexts.append((marker_id, " ".join(words), False))
         else:
-            marker_id = part
+            borrowed = False
-            if _is_known_marker(marker_id, slides, videos, audio):
+            for j in range(i + 1, len(raw_contexts)):
-                marker_positions.append((marker_id, len(ms_words)))
+                next_marker_id, next_text = raw_contexts[j]
+                if next_text:
+                    if next_marker_id in (slides or {}):
+                        break
+                    words = next_text.split()[:10]
+                    contexts.append((marker_id, " ".join(words), True))
+                    borrowed = True
+                    break
+            if not borrowed:
+                contexts.append((marker_id, "", False))
 
-    tr_words = [_normalize_token(tw.word) for tw in transcription]
+    return contexts
-
-    matcher = difflib.SequenceMatcher(None, ms_words, tr_words, autojunk=False)
-    alignment: dict[int, int] = {}
-    for ms_start, tr_start, length in matcher.get_matching_blocks():
-        for k in range(length):
-            alignment[ms_start + k] = tr_start + k
-
-    return ms_words, marker_positions, alignment
 
 
-def _timestamp_for_ms_word(
+def _fuzzy_match_ratio(
-    word_idx: int,
+    phrase_words: list[str],
-    alignment: dict[int, int],
-    ms_len: int,
     transcription: list[TranscribedWord],
-) -> tuple[float, float]:
+    start_idx: int,
+    window_size: int = 10,
+) -> tuple[float, int, int]:
     """
-    Map a manuscript word index to a transcript timestamp and confidence.
+    Calculate how many words from phrase match the transcription at start_idx.
 
-    Confidence levels:
+    Words are matched sequentially: each phrase word must appear at or after
-      1.0 — direct alignment hit
+    the position of the previous match. This prevents false matches where
-      0.8 — a nearby word (within 5 forward) was aligned
+    phrase words appear out of order or far into the window.
-      0.5 — interpolated between two surrounding anchors
+
-      0.3 — extrapolated past the last anchor
+    Returns (ratio, first_match_offset, last_match_end_offset) where offsets
-      0.0 — no alignment data
+    are relative to start_idx. last_match_end_offset points past the last
+    matched word.
     """
-    if not transcription or not alignment:
+    if not phrase_words:
-        return -1.0, 0.0
+        return 0.0, 0, 0
 
-    word_idx = min(word_idx, ms_len)
+    words_to_check = min(len(phrase_words), window_size)
+    # +30 filler allowance: absorbs ad-libbed words spoken before or between
+    # the manuscript cue words without breaking the match ratio.
+    transcript_end = min(start_idx + words_to_check + 30, len(transcription))
 
-    if word_idx in alignment:
+    if start_idx >= len(transcription):
-        return transcription[alignment[word_idx]].start, 1.0
+        return 0.0, 0, 0
 
-    for delta in range(1, 6):
+    transcript_words = [
-        idx = word_idx + delta
+        _normalize_token(transcription[j].word)
-        if idx in alignment:
+        for j in range(start_idx, transcript_end)
-            return transcription[alignment[idx]].start, 0.8
+    ]
 
-    before = max((m for m in alignment if m < word_idx), default=None)
+    matches = 0
-    after = min((m for m in alignment if m > word_idx), default=None)
+    words_checked = 0
+    t_pos = 0
+    first_match_offset = 0
+    last_match_end_offset = 0
 
-    if before is not None and after is not None:
+    for phrase_word in phrase_words[:words_to_check]:
-        t_b, t_a = alignment[before], alignment[after]
+        normalized = _normalize_token(phrase_word)
-        ratio = (word_idx - before) / (after - before)
+        if len(normalized) < 2:
-        t_idx = round(t_b + ratio * (t_a - t_b))
+            continue
-        t_idx = max(0, min(t_idx, len(transcription) - 1))
+        words_checked += 1
-        return transcription[t_idx].start, 0.5
 
-    if before is not None:
+        for j in range(t_pos, len(transcript_words)):
-        return transcription[alignment[before]].end, 0.3
+            t_word = transcript_words[j]
+            matched = False
+            if normalized == t_word:
+                matched = True
+            elif len(normalized) >= 4 and len(t_word) >= 4:
+                if normalized in t_word or t_word in normalized:
+                    matched = True
 
-    if after is not None:
+            if matched:
-        return transcription[alignment[after]].start, 0.3
+                if matches == 0:
+                    first_match_offset = j
+                matches += 1
+                last_match_end_offset = j + 1
+                t_pos = j + 1
+                break
 
-    return -1.0, 0.0
+    ratio = matches / words_checked if words_checked > 0 else 0.0
+    return ratio, first_match_offset, last_match_end_offset
+
+
+def _find_phrase_timestamp(
+    phrase: str,
+    transcription: list[TranscribedWord],
+    start_from: int = 0,
+    fuzzy_threshold: float = 0.5,
+) -> tuple[int, float, float, int]:
+    """
+    Find a phrase in the transcription using fuzzy matching.
+
+    Returns (word_index, timestamp, confidence, match_end_idx) or
+    (-1, -1.0, 0.0, -1) if not found. word_index points to the first
+    matched word. match_end_idx points past the last matched word.
+    """
+    phrase_words = [tok for tok in (_normalize_token(w) for w in phrase.split()) if tok]
+
+    if not phrase_words:
+        return -1, -1.0, 0.0, -1
+
+    best_idx = -1
+    best_ratio = 0.0
+    best_first_offset = 0
+    best_end_offset = 0
+
+    for i in range(start_from, len(transcription)):
+        ratio, first_offset, end_offset = _fuzzy_match_ratio(
+            phrase_words, transcription, i
+        )
+        if ratio > best_ratio:
+            best_ratio = ratio
+            best_idx = i
+            best_first_offset = first_offset
+            best_end_offset = end_offset
+
+        if ratio >= 0.95:
+            break
+
+    if best_ratio >= fuzzy_threshold and best_idx >= 0:
+        actual_idx = best_idx + best_first_offset
+        match_end_idx = best_idx + best_end_offset
+        return actual_idx, transcription[actual_idx].start, best_ratio, match_end_idx
+
+    return -1, -1.0, 0.0, -1
 
 
 def align_markers_to_transcription(
@@ -287,12 +364,14 @@ def align_markers_to_transcription(
     fuzzy_threshold: float = 0.6,
 ) -> list[MarkerTiming]:
     """
-    Align manuscript markers to transcription timestamps using global sequence alignment.
+    Align manuscript markers to transcription timestamps using fuzzy phrase matching.
 
-    Builds a word-level alignment between the manuscript (markers stripped) and the
+    For each known marker, extracts the text immediately following it in the
-    Whisper transcript using difflib.SequenceMatcher. Ad-libbed words in the
+    manuscript and searches for that phrase in the Whisper transcript. Markers are
-    transcript appear as insertions and don't disrupt alignment of surrounding
+    matched in manuscript order, each starting its search after the previous match.
-    manuscript text.
+
+    The filler-word window is intentionally large (+30 words) so that ad-libbed
+    words spoken before or between the manuscript cue words do not prevent a match.
 
     Unknown markers are filtered out — they aren't pronounced and shouldn't be in
     the render plan. Note: [cite:...] markers are stripped at parse time.
@@ -303,46 +382,91 @@ def align_markers_to_transcription(
         slides:          Slide definitions (to identify valid slide markers)
         videos:          Video definitions (to identify valid video markers)
         audio:           Audio definitions (to identify valid audio markers)
-        fuzzy_threshold: Kept for API compatibility; unused in alignment logic
+        fuzzy_threshold: Minimum match ratio (default 0.6 = 60% of words must match)
 
     Returns:
         List of MarkerTiming with timestamps and confidence (known markers only)
     """
-    if not transcription:
+    contexts = _extract_marker_contexts(manuscript_text, slides, videos, audio)
-        return []
-
-    ms_words, marker_positions, alignment = _build_sequence_alignment(
-        manuscript_text, transcription, slides, videos, audio
-    )
-    ms_len = len(ms_words)
     timings: list[MarkerTiming] = []
 
-    for marker_id, word_idx in marker_positions:
+    last_idx = 0
-        context = " ".join(ms_words[word_idx: word_idx + 10])
+    last_end_time = 0.0
-        timestamp, confidence = _timestamp_for_ms_word(
+
-            word_idx, alignment, ms_len, transcription
+    for marker_id, following_text, is_borrowed in contexts:
+        if not following_text.strip():
+            marker_time = last_end_time + 1.0
+            timings.append(
+                MarkerTiming(
+                    marker_id=marker_id,
+                    timestamp=marker_time,
+                    context="(after previous)",
+                    confidence=1.0,
                 )
-        if timestamp >= 0:
+            )
+            last_end_time = marker_time
+            continue
+
+        idx, timestamp, confidence, match_end_idx = _find_phrase_timestamp(
+            following_text,
+            transcription,
+            start_from=last_idx,
+            fuzzy_threshold=fuzzy_threshold,
+        )
+
+        if idx >= 0:
             adjusted_time = max(0.0, timestamp - 0.5)
             timings.append(
                 MarkerTiming(
                     marker_id=marker_id,
                     timestamp=adjusted_time,
-                    context=context[:50],
+                    context=following_text[:50],
                     confidence=confidence,
                 )
             )
+            if not is_borrowed:
+                last_idx = match_end_idx
+                if last_idx > 0 and last_idx <= len(transcription):
+                    last_end_time = transcription[last_idx - 1].end
+                else:
+                    last_end_time = transcription[-1].end if transcription else 0.0
         else:
             timings.append(
                 MarkerTiming(
                     marker_id=marker_id,
                     timestamp=-1.0,
-                    context=context[:50],
+                    context=following_text[:50],
                     confidence=0.0,
                 )
             )
 
-    return timings
+    # Deduplicate slide markers. The manuscript pattern [SN]\n\n[SN] text... is
+    # common: the first blank occurrence is a visual-transition cue and the second
+    # carries the narration text used for alignment. We keep the first entry in
+    # order (preserving manuscript position) but upgrade its timestamp to the
+    # best-matched value found for that ID, then drop subsequent duplicates.
+    slides_set = set(slides or {})
+    seen: dict[str, int] = {}  # marker_id → index in deduped list
+    deduped: list[MarkerTiming] = []
+    for timing in timings:
+        if timing.marker_id not in slides_set:
+            deduped.append(timing)
+            continue
+        if timing.marker_id not in seen:
+            seen[timing.marker_id] = len(deduped)
+            deduped.append(timing)
+        else:
+            prev_idx = seen[timing.marker_id]
+            prev = deduped[prev_idx]
+            if prev.context == "(after previous)" and timing.context != "(after previous)":
+                deduped[prev_idx] = MarkerTiming(
+                    marker_id=prev.marker_id,
+                    timestamp=timing.timestamp,
+                    context=timing.context,
+                    confidence=timing.confidence,
+                )
+
+    return deduped
 
 
 def build_render_plan(
@@ -453,7 +577,25 @@ def build_render_plan(
         time_range=(time_offset, render_end_time) if slide_range else None,
     )
 
-    video_events = _extract_video_events(
+    # Before extracting video events, resolve any referenced videos that are missing
+    # from the project's videos.json by looking them up in shared_assets/videos.json.
+    _VIDEO_MARKER_PREFIXES = (
+        "video:", "narration:", "vft:", "vfb:", "vst:", "vsb:",
+        "vftp:", "vfbp:", "vstp:", "vsbp:",
+    )
+    missing_video_ids = [
+        timing.marker_id[len(prefix):]
+        for timing in marker_timings
+        if timing.timestamp >= 0
+        for prefix in _VIDEO_MARKER_PREFIXES
+        if timing.marker_id.startswith(prefix)
+        and timing.marker_id[len(prefix):] not in videos
+    ]
+    if missing_video_ids:
+        found = resolve_missing_videos(missing_video_ids, project_path, config)
+        videos.update(found)
+
+    video_events, video_warnings = _extract_video_events(
         marker_timings,
         videos,
         config.cutouts,
@@ -461,6 +603,12 @@ def build_render_plan(
         effective_duration,
         time_range=(time_offset, render_end_time) if slide_range else None,
     )
+    if video_warnings:
+        import sys
+        print("\nWarnings:", file=sys.stderr)
+        for w in video_warnings:
+            print(f"  ⚠ {w}", file=sys.stderr)
+        print("", file=sys.stderr)
 
     # Track cached files for triggered videos
     for event in video_events:
@@ -726,13 +874,16 @@ def _extract_video_events(
     slides: dict[str, SlideDefinition],
     total_duration: float,
     time_range: Optional[tuple[float, float]] = None,
-) -> list[VideoEvent]:
+) -> tuple[list[VideoEvent], list[str]]:
     """
     Extract video events from aligned marker timings.
 
     - [video:xxx] events end at the next SLIDE marker
     - [narration:xxx] events run until end
+
+    Returns (events, warnings). Invalid markers are skipped and reported in warnings.
     """
+    warnings: list[str] = []
     range_start, range_end = time_range if time_range else (0.0, float("inf"))
 
     # Collect slide times for video: end time calculation
@@ -772,17 +923,18 @@ def _extract_video_events(
         if shorthand_match:
             video_id = mid[len(shorthand_match) :]
             if video_id not in videos:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [{mid}] references unknown video '{video_id}'. "
+                    f"[{mid}] references unknown video '{video_id}' — skipped. "
                     f"Add it to videos.json or remove the marker."
                 )
+                continue
             implied_cutout, implied_layer = _SHORTHAND[shorthand_match]
             if implied_cutout not in cutouts:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [{mid}] uses shorthand '{shorthand_match}' which requires "
+                    f"[{mid}] requires cutout '{implied_cutout}' which is not defined in project config — skipped. "
-                    f"cutout '{implied_cutout}' but it is not defined in project config. "
                     f"Available cutouts: {list(cutouts.keys())}"
                 )
+                continue
             video_markers.append(
                 (timing.timestamp, video_id, "video", implied_cutout, implied_layer)
             )
@@ -792,20 +944,23 @@ def _extract_video_events(
         if mid.startswith("video:"):
             video_id = mid[6:]
             if video_id not in videos:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [video:{video_id}] references unknown video '{video_id}'. "
+                    f"[video:{video_id}] references unknown video '{video_id}' — skipped. "
                     f"Add it to videos.json or remove the marker."
                 )
+                continue
             video_source = videos[video_id]
             if not video_source.cutout:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [video:{video_id}] — video '{video_id}' has no 'cutout' set in videos.json."
+                    f"[video:{video_id}] has no 'cutout' set in videos.json — skipped."
                 )
+                continue
             if video_source.cutout not in cutouts:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [video:{video_id}] — cutout '{video_source.cutout}' is not defined in project config. "
+                    f"[video:{video_id}] cutout '{video_source.cutout}' is not defined in project config — skipped. "
                     f"Available: {list(cutouts.keys())}"
                 )
+                continue
             video_markers.append((timing.timestamp, video_id, "video", None, None))
             continue
 
@@ -813,20 +968,23 @@ def _extract_video_events(
         if mid.startswith("narration:"):
             video_id = mid[10:]
             if video_id not in videos:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [narration:{video_id}] references unknown video '{video_id}'. "
+                    f"[narration:{video_id}] references unknown video '{video_id}' — skipped. "
                     f"Add it to videos.json or remove the marker."
                 )
+                continue
             video_source = videos[video_id]
             if not video_source.cutout:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [narration:{video_id}] — video '{video_id}' has no 'cutout' set in videos.json."
+                    f"[narration:{video_id}] has no 'cutout' set in videos.json — skipped."
                 )
+                continue
             if video_source.cutout not in cutouts:
-                raise ValueError(
+                warnings.append(
-                    f"Marker [narration:{video_id}] — cutout '{video_source.cutout}' is not defined in project config. "
+                    f"[narration:{video_id}] cutout '{video_source.cutout}' is not defined in project config — skipped. "
                     f"Available: {list(cutouts.keys())}"
                 )
+                continue
             video_markers.append((timing.timestamp, video_id, "narration", None, None))
 
     events: list[VideoEvent] = []
@@ -880,7 +1038,7 @@ def _extract_video_events(
             )
         )
 
-    return events
+    return events, warnings
 
 
 def _extract_audio_events(